STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0328Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NS3859. (401 aa)    
Predicted Functional Partners:
DET0326
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TE2094; match to protein family HMM PF01935.
 
 
 
 0.981
DET0327
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00170.
 
     0.922
DET0549
Exonuclease SbcC, putative; Identified by similarity to SP:P13458.
 
   
 0.798
sbcD
Nuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
 
     0.790
DET0524
PBS lyase HEAT-like repeat domain protein.
  
     0.765
DET0777
R3H domain protein.
  
     0.555
DET0329
Transporter, LysE family.
       0.534
DET0571
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.532
DET0330
Identified by match to protein family HMM PF00850.
       0.472
DET0783
Translin family protein; Identified by similarity to OMNI:NTL02MA0091; match to protein family HMM PF01997.
  
     0.458
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.