STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0329Transporter, LysE family. (206 aa)    
Predicted Functional Partners:
DET0330
Identified by match to protein family HMM PF00850.
       0.695
DET0328
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NS3859.
       0.534
DET0961
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MM1085; match to protein family HMM PF01995.
  
     0.459
pheT
phenylalanyl-tRNA synthetase, beta subunit; Identified by similarity to SP:P17922; match to protein family HMM PF01588; match to protein family HMM PF03483; match to protein family HMM TIGR00472; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.438
DET0326
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TE2094; match to protein family HMM PF01935.
  
    0.423
DET0327
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00170.
       0.408
DET0352
Conserved hypothetical protein; Identified by similarity to GB:BAC73118.1.
  
     0.401
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.