Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DET04011,4-dihydroxy-2-naphthoate octaprenyltransferase, putative; Identified by similarity to SP:P32166. (306 aa)    
Predicted Functional Partners:
DET0398
Ubiquinone/menaquinone biosynthesis methlytransferase UbiE, putative; Identified by similarity to SP:P27851.
 
  
 0.982
DET0399
Ubiquinone/menaquinone biosynthesis methlytransferase UbiE, putative; Identified by similarity to SP:P27851.
 
  
 0.982
hepT
Heptaprenyl diphosphate synthase component II; Identified by similarity to SP:P55785; match to protein family HMM PF00348; Belongs to the FPP/GGPP synthase family.
 
  
 0.877
DET0402
Methyltransferase, UbiE/COQ5 family.
 
   
 0.814
DET0400
Identified by match to protein family HMM PF01761.
       0.773
DET0403
Ser/Thr protein phosphatase family protein; Identified by similarity to OMNI:NTL01MK0801.
       0.548
ispE
4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
  
  
 0.547
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.460
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
       0.412
DET0395
Glycoprotease family protein/hydrolase, beta-phosphoglucomutase family; Identified by match to protein family HMM PF00814; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; match to protein family HMM TIGR02009.
       0.412
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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