STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0408Cation channel family protein; Identified by similarity to OMNI:NTL01XC3234. (269 aa)    
Predicted Functional Partners:
DET0409
polyA polymerase family protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.773
DET0029
Trk system potassium uptake protein, putative; Identified by similarity to SP:P21166.
  
 
 0.660
DET0049
ROK family protein; Identified by match to protein family HMM PF00480.
 
      0.632
nodI
Nodulation ATP-binding protein I; Identified by similarity to SP:P23703.
       0.551
DET0411
Putative NodJ; Identified by similarity to SP:P55475.
       0.551
DET0407
Conserved domain protein; Identified by similarity to OMNI:NTL03ST4202.
       0.550
DET0412
Conserved hypothetical protein; Identified by similarity to SP:Q58794.
  
    0.483
DET0413
Identified by similarity to SP:O22000; match to protein family HMM PF00383.
       0.450
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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