STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0409polyA polymerase family protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (418 aa)    
Predicted Functional Partners:
DET0408
Cation channel family protein; Identified by similarity to OMNI:NTL01XC3234.
       0.773
dapB
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate.
  
    0.727
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
  
    0.654
mgsA-2
Methylglyoxal synthase, putative; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
  
    0.654
DET0396
Identified by similarity to GP:29894046; match to protein family HMM TIGR00150.
      0.606
nodI
Nodulation ATP-binding protein I; Identified by similarity to SP:P23703.
       0.551
DET0411
Putative NodJ; Identified by similarity to SP:P55475.
       0.551
DET0407
Conserved domain protein; Identified by similarity to OMNI:NTL03ST4202.
       0.550
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
 
 
 
 0.540
DET0412
Conserved hypothetical protein; Identified by similarity to SP:Q58794.
  
   0.505
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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