STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nodINodulation ATP-binding protein I; Identified by similarity to SP:P23703. (305 aa)    
Predicted Functional Partners:
DET0411
Putative NodJ; Identified by similarity to SP:P55475.
 
 
  0.991
DET1179
ABC transporter, ATP-binding/permease protein; Identified by similarity to OMNI:NTL01TT2326.
   
 0.791
DET1180
ABC transporter, ATP-binding/permease protein; Identified by similarity to OMNI:NTL03CP0527.
   
0.791
DET0795
ABC transporter, permease protein; Identified by similarity to SP:P75774.
 
    0.691
DET1620
Membrane protein, putative.
  
 
 0.676
DET0412
Conserved hypothetical protein; Identified by similarity to SP:Q58794.
       0.618
DET0413
Identified by similarity to SP:O22000; match to protein family HMM PF00383.
       0.618
DET0944
High-affinity branched-chain amino acid ABC transporter, permease protein, putative; Identified by similarity to SP:P22729; Belongs to the binding-protein-dependent transport system permease family.
 
      0.561
DET0814
ABC transporter, permease protein; Identified by similarity to OMNI:NTL01CG1421.
 
    0.555
DET0408
Cation channel family protein; Identified by similarity to OMNI:NTL01XC3234.
       0.551
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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