STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0411Putative NodJ; Identified by similarity to SP:P55475. (255 aa)    
Predicted Functional Partners:
nodI
Nodulation ATP-binding protein I; Identified by similarity to SP:P23703.
 
 
  0.991
DET0520
Daunorubicin resistance ABC transporter, ATP-binding protein, putative; Identified by similarity to OMNI:TM1403; match to protein family HMM TIGR01188.
 
    0.728
DET0794
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:TM0389.
 
    0.701
DET0412
Conserved hypothetical protein; Identified by similarity to SP:Q58794.
       0.618
DET0413
Identified by similarity to SP:O22000; match to protein family HMM PF00383.
       0.618
DET0408
Cation channel family protein; Identified by similarity to OMNI:NTL01XC3234.
       0.551
DET0409
polyA polymerase family protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.551
DET0795
ABC transporter, permease protein; Identified by similarity to SP:P75774.
  
  
  0.496
DET0414
Identified by similarity to OMNI:TM0358; match to protein family HMM TIGR00147.
       0.443
DET0645
Nitroreductase family protein.
   
    0.424
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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