STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0418Amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM TIGR01726. (273 aa)    
Predicted Functional Partners:
DET0417
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P48243.
 0.999
DET0419
Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P30860; similarity to SP:P39174; Belongs to the bacterial solute-binding protein 3 family.
 
 0.996
DET0857
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL02SC5631.
 
 
  
 0.865
pstB
Phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
    
 0.814
DET1176
Fec-type ABC transporter, ATP-binding protein.
 
      0.651
DET0794
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:TM0389.
      0.581
DET0813
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01LI0916.
      0.556
nodI
Nodulation ATP-binding protein I; Identified by similarity to SP:P23703.
      0.547
DET1159
Molybdenum ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF03459; Belongs to the ABC transporter superfamily.
 
 
  
 0.522
DET0420
Hypothetical protein; Identified by Glimmer2; putative.
       0.501
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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