node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DET0024 | DET0444 | DET0024 | DET0444 | DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. | Conserved hypothetical protein TIGR01033; Identified by similarity to OMNI:CT1665; match to protein family HMM PF01709; match to protein family HMM TIGR01033. | 0.405 |
DET0024 | recA | DET0024 | DET1606 | DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. | RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.596 |
DET0024 | recX | DET0024 | DET1607 | DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. | Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family. | 0.534 |
DET0024 | ruvA | DET0024 | DET0442 | DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.637 |
DET0024 | ruvB | DET0024 | DET0606 | DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.570 |
DET0024 | ruvC | DET0024 | DET0443 | DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.531 |
DET0024 | uvrB | DET0024 | DET0441 | DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.538 |
DET0440 | DET0444 | DET0440 | DET0444 | Hypothetical protein; Identified by Glimmer2; putative. | Conserved hypothetical protein TIGR01033; Identified by similarity to OMNI:CT1665; match to protein family HMM PF01709; match to protein family HMM TIGR01033. | 0.631 |
DET0440 | acpS | DET0440 | DET0445 | Hypothetical protein; Identified by Glimmer2; putative. | Holo-(acyl-carrier-protein) synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.425 |
DET0440 | ruvA | DET0440 | DET0442 | Hypothetical protein; Identified by Glimmer2; putative. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.631 |
DET0440 | ruvC | DET0440 | DET0443 | Hypothetical protein; Identified by Glimmer2; putative. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.631 |
DET0440 | uvrB | DET0440 | DET0441 | Hypothetical protein; Identified by Glimmer2; putative. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.773 |
DET0444 | DET0024 | DET0444 | DET0024 | Conserved hypothetical protein TIGR01033; Identified by similarity to OMNI:CT1665; match to protein family HMM PF01709; match to protein family HMM TIGR01033. | DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361. | 0.405 |
DET0444 | DET0440 | DET0444 | DET0440 | Conserved hypothetical protein TIGR01033; Identified by similarity to OMNI:CT1665; match to protein family HMM PF01709; match to protein family HMM TIGR01033. | Hypothetical protein; Identified by Glimmer2; putative. | 0.631 |
DET0444 | acpS | DET0444 | DET0445 | Conserved hypothetical protein TIGR01033; Identified by similarity to OMNI:CT1665; match to protein family HMM PF01709; match to protein family HMM TIGR01033. | Holo-(acyl-carrier-protein) synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.551 |
DET0444 | ruvA | DET0444 | DET0442 | Conserved hypothetical protein TIGR01033; Identified by similarity to OMNI:CT1665; match to protein family HMM PF01709; match to protein family HMM TIGR01033. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.956 |
DET0444 | ruvC | DET0444 | DET0443 | Conserved hypothetical protein TIGR01033; Identified by similarity to OMNI:CT1665; match to protein family HMM PF01709; match to protein family HMM TIGR01033. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.876 |
DET0444 | uvrB | DET0444 | DET0441 | Conserved hypothetical protein TIGR01033; Identified by similarity to OMNI:CT1665; match to protein family HMM PF01709; match to protein family HMM TIGR01033. | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.631 |
acpS | DET0440 | DET0445 | DET0440 | Holo-(acyl-carrier-protein) synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.425 |
acpS | DET0444 | DET0445 | DET0444 | Holo-(acyl-carrier-protein) synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | Conserved hypothetical protein TIGR01033; Identified by similarity to OMNI:CT1665; match to protein family HMM PF01709; match to protein family HMM TIGR01033. | 0.551 |