STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0523Acetyltransferase, GNAT family; Identified by similarity to GP:23978678. (186 aa)    
Predicted Functional Partners:
DET0524
PBS lyase HEAT-like repeat domain protein.
       0.773
DET0525
Conserved hypothetical protein; Identified by similarity to OMNI:AF0525.
       0.773
DET0526
pmbA/tldD family protein.
       0.752
DET0527
TldD/PmbA family protein; Identified by similarity to SP:P46473.
       0.752
DET0144
Acetyltransferase, GNAT family; Identified by similarity to OMNI:PSPTO1011.
  
     0.748
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.580
DET0529
Glucose-1-phosphate thymidylyltransferase; Identified by similarity to GP:1814004.
  
    0.520
DET0528
Identified by match to protein family HMM PF02880.
       0.516
glmS
Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
    0.510
DET0530
Glucose-1-phosphate thymidylyltransferase; Identified by similarity to SP:P08075.
  
    0.495
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.