STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0524PBS lyase HEAT-like repeat domain protein. (316 aa)    
Predicted Functional Partners:
efp-1
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.893
efp-2
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.893
DET0523
Acetyltransferase, GNAT family; Identified by similarity to GP:23978678.
       0.773
DET0525
Conserved hypothetical protein; Identified by similarity to OMNI:AF0525.
       0.773
DET0571
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.771
DET0328
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NS3859.
  
     0.765
DET0549
Exonuclease SbcC, putative; Identified by similarity to SP:P13458.
 
     0.761
DET0327
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00170.
  
     0.755
DET0526
pmbA/tldD family protein.
       0.752
DET0527
TldD/PmbA family protein; Identified by similarity to SP:P46473.
       0.752
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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