STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0530Glucose-1-phosphate thymidylyltransferase; Identified by similarity to SP:P08075. (393 aa)    
Predicted Functional Partners:
DET0528
Identified by match to protein family HMM PF02880.
  
 0.912
glmS
Glucosamine--fructose-6-phosphate aminotransferase, isomerizing; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
 0.877
DET0529
Glucose-1-phosphate thymidylyltransferase; Identified by similarity to GP:1814004.
 
    
0.762
DET0204
NAD-dependent epimerase/dehydratase family protein.
 
 
 0.738
DET0525
Conserved hypothetical protein; Identified by similarity to OMNI:AF0525.
 
     0.717
DET0202
Histidinol-phosphate phosphatase family protein/glycosyl transferase, group 2 family protein; Identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662.
 
 
 0.707
DET0211
Glycosyl transferase, group 1 family protein.
  
   0.556
DET0526
pmbA/tldD family protein.
       0.504
DET0527
TldD/PmbA family protein; Identified by similarity to SP:P46473.
       0.504
DET0523
Acetyltransferase, GNAT family; Identified by similarity to GP:23978678.
  
    0.495
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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