STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0533HAD-superfamily hydrolase, subfamily IA; Identified by match to protein family HMM TIGR01549. (234 aa)    
Predicted Functional Partners:
DET0532
Phosphatidylethanolamine-binding protein, putative; Identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481.
  
    0.788
DET1036
Serine protease, DegP/HtrA family; Identified by similarity to SP:P09376.
   
 
  0.683
DET1037
Serine protease, DegP/HtrA family; Identified by similarity to SP:O34358; similarity to SP:P09376.
   
 
  0.683
DET1285
Serine protease, DegP/HtrA family; Identified by similarity to SP:O34358.
   
 
  0.683
DET1286
Serine protease, DegP/HtrA family; Identified by similarity to SP:P09376; match to protein family HMM PF00089.
   
 
  0.683
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
 0.585
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.576
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.554
holB
DNA polymerase III, delta prime subunit; Identified by similarity to SP:P37540.
       0.506
DET0536
Conserved hypothetical protein; Identified by match to protein family HMM PF04468.
       0.506
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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