STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0571Hypothetical protein; Identified by Glimmer2; putative. (408 aa)    
Predicted Functional Partners:
prfB
Peptide chain release factor 2, programmed frameshift; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.823
DET0222
Serine protease inhibitor family protein; Identified by match to protein family HMM PF00079; Belongs to the serpin family.
 
 
  0.786
DET0573
Oligopeptide-binding protein, putative; Identified by similarity to SP:P23843.
     
 0.780
DET0572
DNA repair protein, RadC family; Identified by match to protein family HMM TIGR00608; Belongs to the UPF0758 family.
       0.773
DET0524
PBS lyase HEAT-like repeat domain protein.
 
  
 0.768
DET1631
TPR domain protein; Identified by match to protein family HMM PF00515.
  
 
 0.709
DET0783
Translin family protein; Identified by similarity to OMNI:NTL02MA0091; match to protein family HMM PF01997.
  
     0.675
DET0114
ABC transporter, substrate-binding protein, putative; Identified by similarity to SP:P46904.
  
     0.627
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
 0.608
DET0538
ATP-binding protein, DnaC family; Identified by similarity to SP:P07905.
 
     0.589
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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