Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DET0573Oligopeptide-binding protein, putative; Identified by similarity to SP:P23843. (530 aa)    
Predicted Functional Partners:
DET1493
Peptide ABC transporter, permease protein.
 
 0.996
DET1492
Peptide ABC transporter, permease protein.
 
 0.981
DET1491
Peptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 
 0.879
DET1490
Peptide ABC transporter, ATP-binding protein.
 
 
 0.866
DET0571
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.780
prfB
Peptide chain release factor 2, programmed frameshift; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.773
DET0572
DNA repair protein, RadC family; Identified by match to protein family HMM TIGR00608; Belongs to the UPF0758 family.
       0.773
DET1494
Peptide ABC transporter, periplasmic peptide-binding protein; Identified by match to protein family HMM PF00496.
  
  
 
0.551
nfi
Endonuclease V; DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.
       0.508
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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