STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0615Hydrogenase, group 3, VhuA subunit, putative; Identified by similarity to GP:1747408; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (479 aa)    
Predicted Functional Partners:
DET0614
Hydrogenase, group 3, VhuG subunit, putative; Identified by similarity to GP:1747407.
 
 0.999
DET0729
[Fe] hydrogenase, HymB subunit, putative; Identified by similarity to GP:14250934.
   
 
 0.950
DET0864
Hydrogenase subunit HymB, putative; Identified by similarity to GP:14250934.
   
 
 0.950
DET0616
Hydrogenase maturation protease; Identified by similarity to SP:P19930; match to protein family HMM TIGR00072.
 
  
 0.939
DET0147
[Fe] hydrogenase, large subunit HymC, putative; Identified by similarity to GP:14250935; match to protein family HMM PF02256.
   
 
 0.862
DET0613
Hypothetical protein; Identified by Glimmer2; putative.
       0.468
DET0110
[Ni/Fe] hydrogenase, group 1, large subunit, putative; Identified by similarity to SP:P21852; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
0.441
DET0612
Histone acetyltransferase, ELP3 family; Identified by match to protein family HMM TIGR01211.
       0.429
DET0863
Hydrogenase subunit HymA, putative; Identified by similarity to GP:14250933.
   
 
 0.423
hypD
Hydrogenase expression/formation protein HypD; Identified by similarity to SP:P24192; match to protein family HMM PF01924; match to protein family HMM TIGR00075.
 
   
 0.419
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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