STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0616Hydrogenase maturation protease; Identified by similarity to SP:P19930; match to protein family HMM TIGR00072. (167 aa)    
Predicted Functional Partners:
DET0615
Hydrogenase, group 3, VhuA subunit, putative; Identified by similarity to GP:1747408; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
 0.939
DET0614
Hydrogenase, group 3, VhuG subunit, putative; Identified by similarity to GP:1747407.
 
  
 0.932
DET0214
Iron-sulfur cluster-binding protein/coenzyme F420-reducing hydrogenase, beta subunit, putative; Identified by similarity to SP:P19499; match to protein family HMM PF04422.
 
 
 0.923
DET0198
Glutaredoxin family protein; Identified by similarity to SP:P23171.
  
     0.693
DET1571
Hydrogenase, group 4, HycE subunit, putative; Identified by similarity to SP:P77329; match to protein family HMM PF00346.
  
  
 0.587
DET0199
Ferredoxin-thioredoxin reductase, catalytic subunit, putative/rubredoxin; Identified by similarity to SP:P51386.
  
     0.584
DET0110
[Ni/Fe] hydrogenase, group 1, large subunit, putative; Identified by similarity to SP:P21852; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
 0.492
DET0613
Hypothetical protein; Identified by Glimmer2; putative.
       0.468
DET0815
FeS assembly ATPase SufC, putative.
  
     0.440
DET0612
Histone acetyltransferase, ELP3 family; Identified by match to protein family HMM TIGR01211.
       0.429
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.