STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0620Conserved domain protein; Identified by similarity to GP:28410532. (379 aa)    
Predicted Functional Partners:
pcrA
ATP-dependent DNA helicase PcrA; Identified by similarity to SP:P56255; match to protein family HMM TIGR01369.
  
   0.952
DET0621
Membrane protein, putative; Identified by similarity to OMNI:NTL01BH1315.
 
     0.743
DET0618
Thiol-disulfide oxidoreductase, putative; Identified by similarity to SP:P35160.
       0.550
ccdA
Cytochrome c-type biogenesis protein CcdA; Identified by similarity to SP:P45706.
       0.550
DET0617
Hypothetical protein; Identified by Glimmer2; putative.
       0.526
nrd-3
Ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
    0.423
DET0622
Radical SAM domain protein.
       0.415
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.