STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0622Radical SAM domain protein. (249 aa)    
Predicted Functional Partners:
nrd-3
Ribonucleotide reductase; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
       0.773
DET0352
Conserved hypothetical protein; Identified by similarity to GB:BAC73118.1.
  
     0.770
DET0114
ABC transporter, substrate-binding protein, putative; Identified by similarity to SP:P46904.
  
     0.757
DET0755
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.740
DET0754
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.735
DET0115
ABC transporter, permease protein, putative; Identified by similarity to SP:P75774; similarity to OMNI:NTL01BMA0802.
  
     0.733
DET1379
Auxin-responsive GH3 protein homolog, putative.
  
     0.690
mpgSP
Mannosyl-3-phosphoglycerate synthase/mannosyl-3-phosphoglycerate phosphatase; Identified by similarity to GP:28950684; similarity to GP:28950685; match to protein family HMM TIGR01484.
  
     0.662
DET1194
Conserved hypothetical protein; Identified by similarity to OMNI:TM0646.
  
     0.650
DET0240
Tetrapyrrole methylase family protein.
  
     0.611
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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