STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0628Radical SAM domain protein; Identified by match to protein family HMM TIGR00238. (439 aa)    
Predicted Functional Partners:
DET0629
D-ala D-ala ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
     0.916
DET0221
L-lysine 2,3-aminomutase, putative/acetyltransferase, GNAT family; Identified by similarity to GP:5410603; match to protein family HMM TIGR00238.
  
  
 
0.908
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
  0.800
DET0630
Transcriptional regulator, Fur family; Belongs to the Fur family.
       0.489
DET0631
Cation ABC transporter, periplasmc-binding protein; Belongs to the bacterial solute-binding protein 9 family.
       0.489
DET0632
Cation ABC transporter, ATP-binding protein; Identified by similarity to SP:Q9XDA6.
       0.489
DET0633
Cation ABC transporter, permease protein; Identified by similarity to GP:5019735.
       0.489
DET0627
Hypothetical protein; Identified by Glimmer2; putative.
       0.481
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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