STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0632Cation ABC transporter, ATP-binding protein; Identified by similarity to SP:Q9XDA6. (254 aa)    
Predicted Functional Partners:
DET0631
Cation ABC transporter, periplasmc-binding protein; Belongs to the bacterial solute-binding protein 9 family.
 
 
 0.999
DET0633
Cation ABC transporter, permease protein; Identified by similarity to GP:5019735.
 0.999
DET1491
Peptide ABC transporter, ATP-binding protein; Identified by match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
     
0.900
DET0630
Transcriptional regulator, Fur family; Belongs to the Fur family.
  
  
 0.847
DET0944
High-affinity branched-chain amino acid ABC transporter, permease protein, putative; Identified by similarity to SP:P22729; Belongs to the binding-protein-dependent transport system permease family.
 
      0.832
DET0941
High-affinity branched chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P21630.
 
     
0.676
DET0097
Iron dependent repressor, putative; Identified by match to protein family HMM PF02742.
  
  
 0.645
DET0953
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00403; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
     
 0.556
DET0628
Radical SAM domain protein; Identified by match to protein family HMM TIGR00238.
       0.489
DET0629
D-ala D-ala ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.489
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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