Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DET0650ABC-type cobalamin/Fe3+-siderophores transport systems, periplasmic binding protein, putative; Identified by similarity to OMNI:NTL01TT0342. (338 aa)    
Predicted Functional Partners:
DET0651
ABC-type cobalamin/Fe3+-siderophores transport systems, permease component; Identified by similarity to PIR:S54438; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.867
DET0652
ABC-type cobalamin/Fe3+-siderophores transport system, ATP-binding protein; Identified by similarity to SP:P23878.
 
 
 0.812
DET0685
ABC-type cobalamin/Fe3+-siderophores transport systems, permease component; Identified by similarity to PIR:S54438.
 
 
 0.752
DET0653
Conserved hypothetical protein; Identified by similarity to OMNI:MJ1613.
    
 0.719
DET0686
ABC-type cobalamin/Fe3+-siderophores transport system, ATP-binding protein; Identified by similarity to SP:P23878.
 
 
 0.659
DET1175
Fec-type ABC transporter, permease protein; Identified by similarity to GP:17063216; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.592
DET1556
Conserved hypothetical protein; Identified by similarity to OMNI:MJ1613.
 
    
 0.585
DET1176
Fec-type ABC transporter, ATP-binding protein.
  
 
 0.554
DET0314
Conserved hypothetical protein; Identified by similarity to OMNI:MJ1613.
 
    
 0.538
DET0649
Hypothetical protein; Identified by Glimmer2; putative.
       0.526
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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