Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DET0666Carbon monoxide dehydrogenase, alpha subunit; Identified by similarity to SP:P27988; match to protein family HMM TIGR00316. (733 aa)    
Predicted Functional Partners:
acsC-1
Corrinoid/iron-sulfur protein, large subunit; Identified by similarity to SP:Q07340.
 
 0.999
acsD-1
Corrinoid/iron-sulfur protein, small subunit; Identified by similarity to SP:Q07341.
 0.999
acsD-2
Corrinoid/iron-sulfur protein, small subunit; Identified by similarity to SP:Q07341.
 
 0.998
acsC-2
Corrinoid/iron-sulfur protein, large subunit; Identified by similarity to SP:Q07340; match to protein family HMM PF04060.
 
 
 0.995
DET0700
Carbon monoxide dehydrogenase, alpha subunit; Identified by similarity to SP:P27988; match to protein family HMM TIGR00316.
  
 
 0.992
fhs-1
Formate--tetrahydrofolate ligase; Belongs to the formate--tetrahydrofolate ligase family.
    
 0.969
acsF-1
Carbon monoxide dehydrogenase nickel-insertion accessory protein; Identified by similarity to GP:20467243; match to protein family HMM PF00991.
 
  
 0.967
DET0664
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.940
acsF-2
Carbon monoxide dehydrogenase nickel-insertion accessory protein; Identified by similarity to GP:20467243; match to protein family HMM PF00991.
 
  
 0.936
porD
Pyruvic-ferredoxin oxidoreductase, delta subunit; Identified by similarity to SP:Q51803.
   
 
  0.924
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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