Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DET0679Nitroreductase family protein; Identified by similarity to OMNI:NTL01CA1531. (171 aa)    
Predicted Functional Partners:
tkt-2
Transketolase; Identified by match to protein family HMM TIGR00232.
  
    0.641
DET0677
Ribose-5-phosphate isomerase, putative; Identified by match to protein family HMM TIGR00689; match to protein family HMM TIGR01120.
       0.634
DET0680
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA4536.
       0.534
DET1033
long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P29212.
   
   0.437
DET0115
ABC transporter, permease protein, putative; Identified by similarity to SP:P75774; similarity to OMNI:NTL01BMA0802.
   
    0.428
DET0411
Putative NodJ; Identified by similarity to SP:P55475.
   
    0.428
DET0519
ABC transporter, permease protein, putative; Identified by similarity to OMNI:NTL01BMA0802.
   
    0.428
DET0795
ABC transporter, permease protein; Identified by similarity to SP:P75774.
   
    0.428
DET0814
ABC transporter, permease protein; Identified by similarity to OMNI:NTL01CG1421.
   
    0.428
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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