STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0685ABC-type cobalamin/Fe3+-siderophores transport systems, permease component; Identified by similarity to PIR:S54438. (334 aa)    
Predicted Functional Partners:
DET0686
ABC-type cobalamin/Fe3+-siderophores transport system, ATP-binding protein; Identified by similarity to SP:P23878.
 
 0.992
DET0652
ABC-type cobalamin/Fe3+-siderophores transport system, ATP-binding protein; Identified by similarity to SP:P23878.
 
 0.971
DET1176
Fec-type ABC transporter, ATP-binding protein.
 
 0.941
DET0684
ABC-type cobalamin/Fe3+-siderophores transport system, periplasmic binding protein, putative; Identified by similarity to OMNI:NTL01TT0342.
 
 
 0.918
DET0650
ABC-type cobalamin/Fe3+-siderophores transport systems, periplasmic binding protein, putative; Identified by similarity to OMNI:NTL01TT0342.
 
 
 0.849
DET0250
Iron ABC transporter, periplasmic iron-binding protein, putative; Identified by similarity to OMNI:NTL01TT0342.
 
 
 0.826
DET0687
Conserved hypothetical protein; Identified by similarity to OMNI:MJ1613.
       0.752
cobD-3
Cobalamin biosynthesis protein CobD; Identified by match to protein family HMM TIGR00380.
       0.752
DET0689
Histidinol-phosphate aminotransferase, putative; Identified by similarity to SP:P17731.
       0.752
DET1174
Fec-type ABC transporter, periplasmic iron-binding protein; Identified by match to protein family HMM PF01497.
 
 
 0.699
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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