STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0697DNA-binding response regulator, LuxR family; Identified by similarity to SP:P55184. (224 aa)    
Predicted Functional Partners:
DET0431
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 
 0.828
DET0662
Sensor histidine kinase.
 
   0.827
DET1560
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 
 0.825
DET1064
Sensory box sensor histidine kinase; Identified by similarity to OMNI:NTL02MA1586; match to protein family HMM TIGR00229.
  
   0.812
DET1530
Sensor histidine kinase.
  
   0.789
DET0698
Hypothetical protein; Identified by Glimmer2; putative.
       0.574
acsC-2
Corrinoid/iron-sulfur protein, large subunit; Identified by similarity to SP:Q07340; match to protein family HMM PF04060.
       0.542
DET0700
Carbon monoxide dehydrogenase, alpha subunit; Identified by similarity to SP:P27988; match to protein family HMM TIGR00316.
       0.507
DET0127
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
  
 
 0.408
acsD-2
Corrinoid/iron-sulfur protein, small subunit; Identified by similarity to SP:Q07341.
       0.404
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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