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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acsF-2Carbon monoxide dehydrogenase nickel-insertion accessory protein; Identified by similarity to GP:20467243; match to protein family HMM PF00991. (260 aa)    
Predicted Functional Partners:
DET0700
Carbon monoxide dehydrogenase, alpha subunit; Identified by similarity to SP:P27988; match to protein family HMM TIGR00316.
 
  
 0.968
acsD-2
Corrinoid/iron-sulfur protein, small subunit; Identified by similarity to SP:Q07341.
 
  
 0.942
DET0666
Carbon monoxide dehydrogenase, alpha subunit; Identified by similarity to SP:P27988; match to protein family HMM TIGR00316.
 
  
 0.937
acsC-2
Corrinoid/iron-sulfur protein, large subunit; Identified by similarity to SP:Q07340; match to protein family HMM PF04060.
 
  
 0.912
DET0704
Iron-sulfur cluster binding protein; Identified by match to protein family HMM PF00111.
 
     0.906
DET0698
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.871
acsC-1
Corrinoid/iron-sulfur protein, large subunit; Identified by similarity to SP:Q07340.
 
  
 0.838
acsD-1
Corrinoid/iron-sulfur protein, small subunit; Identified by similarity to SP:Q07341.
 
  
 0.838
folD-2
Methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; Identified by similarity to SP:P54382; match to protein family HMM PF02882.
     
 0.797
DET0664
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.772
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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