STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
porGPyruvic-ferredoxin oxidoreductase, gamma subunit; Identified by similarity to SP:Q51799. (190 aa)    
Predicted Functional Partners:
porA
Pyruvic-ferredoxin oxidoreductase, alpha subunit; Identified by similarity to SP:Q51804.
 
 0.999
porB
Pyruvic-ferredoxin oxidoreductase, beta subunit; Identified by similarity to SP:Q51805.
 
 0.999
porD
Pyruvic-ferredoxin oxidoreductase, delta subunit; Identified by similarity to SP:Q51803.
 
 0.996
oadA
Oxaloacetate decarboxylase, alpha subunit; Identified by similarity to SP:Q03030; match to protein family HMM PF02436; match to protein family HMM TIGR01108.
     
 0.958
DET0110
[Ni/Fe] hydrogenase, group 1, large subunit, putative; Identified by similarity to SP:P21852; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
   
 
 0.925
DET0111
[Ni/Fe] hydrogenase, group 1, small subunit, putative; Identified by similarity to SP:P12943; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409.
   
 
 0.923
accC
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
   
 0.917
ppsA
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
    
 0.912
acs
acetyl-CoA synthetase; Identified by similarity to SP:P27095.
  
 
 0.911
ilvB
Acetolactate synthase, large subunit, biosynthetic type; Identified by match to protein family HMM PF02776; match to protein family HMM TIGR00118.
    
 0.905
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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