Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
porDPyruvic-ferredoxin oxidoreductase, delta subunit; Identified by similarity to SP:Q51803. (86 aa)    
Predicted Functional Partners:
porA
Pyruvic-ferredoxin oxidoreductase, alpha subunit; Identified by similarity to SP:Q51804.
 
 0.999
porB
Pyruvic-ferredoxin oxidoreductase, beta subunit; Identified by similarity to SP:Q51805.
 
 0.999
porG
Pyruvic-ferredoxin oxidoreductase, gamma subunit; Identified by similarity to SP:Q51799.
 0.997
DET0666
Carbon monoxide dehydrogenase, alpha subunit; Identified by similarity to SP:P27988; match to protein family HMM TIGR00316.
   
 
  0.924
DET1133
Iron-sulfur cluster-binding protein.
  
 
  0.919
ppsA
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
    
 0.911
acs
acetyl-CoA synthetase; Identified by similarity to SP:P27095.
   
 
 0.910
DET0111
[Ni/Fe] hydrogenase, group 1, small subunit, putative; Identified by similarity to SP:P12943; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409.
     
 0.906
acsC-1
Corrinoid/iron-sulfur protein, large subunit; Identified by similarity to SP:Q07340.
   
 
  0.904
acsD-1
Corrinoid/iron-sulfur protein, small subunit; Identified by similarity to SP:Q07341.
   
 
  0.902
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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