Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
porAPyruvic-ferredoxin oxidoreductase, alpha subunit; Identified by similarity to SP:Q51804. (390 aa)    
Predicted Functional Partners:
porD
Pyruvic-ferredoxin oxidoreductase, delta subunit; Identified by similarity to SP:Q51803.
 
 0.999
porB
Pyruvic-ferredoxin oxidoreductase, beta subunit; Identified by similarity to SP:Q51805.
 0.999
porG
Pyruvic-ferredoxin oxidoreductase, gamma subunit; Identified by similarity to SP:Q51799.
 
 0.998
oadA
Oxaloacetate decarboxylase, alpha subunit; Identified by similarity to SP:Q03030; match to protein family HMM PF02436; match to protein family HMM TIGR01108.
    
 0.939
acs
acetyl-CoA synthetase; Identified by similarity to SP:P27095.
  
 
 0.921
ppsA
Phosphoenolpyruvate synthase; Catalyzes the phosphorylation of pyruvate to phosphoenolpyruvate; Belongs to the PEP-utilizing enzyme family.
    
 0.919
ilvN
Acetolactate synthase, small subunit; Identified by match to protein family HMM TIGR00119.
  
 
 0.914
DET1133
Iron-sulfur cluster-binding protein.
  
 
 0.914
ilvB
Acetolactate synthase, large subunit, biosynthetic type; Identified by match to protein family HMM PF02776; match to protein family HMM TIGR00118.
    
 0.911
DET0111
[Ni/Fe] hydrogenase, group 1, small subunit, putative; Identified by similarity to SP:P12943; match to protein family HMM PF01058; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409.
     
 0.910
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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