STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0773CAAX amino terminal protease family protein; Identified by similarity to OMNI:NTL01MM1149. (246 aa)    
Predicted Functional Partners:
DET0774
Metallopeptidase, M50 family; Belongs to the peptidase M50B family.
       0.773
thiC
Thiamine biosynthesis protein ThiC; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.
       0.658
gidB
Methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.479
DET0645
Nitroreductase family protein.
  
    0.435
DET0679
Nitroreductase family protein; Identified by similarity to OMNI:NTL01CA1531.
  
    0.435
DET0824
Nitroreductase family protein.
  
    0.435
DET0024
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
       0.426
DET0115
ABC transporter, permease protein, putative; Identified by similarity to SP:P75774; similarity to OMNI:NTL01BMA0802.
   
    0.424
DET0411
Putative NodJ; Identified by similarity to SP:P55475.
   
    0.424
DET0519
ABC transporter, permease protein, putative; Identified by similarity to OMNI:NTL01BMA0802.
   
    0.424
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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