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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0812PAP2 family protein. (196 aa)    
Predicted Functional Partners:
DET1033
long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P29212.
    
 0.885
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.870
DET0114
ABC transporter, substrate-binding protein, putative; Identified by similarity to SP:P46904.
  
     0.531
DET0813
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01LI0916.
   
   0.507
DET0953
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00403; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
     
 0.492
DET0352
Conserved hypothetical protein; Identified by similarity to GB:BAC73118.1.
  
     0.484
DET0814
ABC transporter, permease protein; Identified by similarity to OMNI:NTL01CG1421.
       0.480
DET1621
Hypothetical protein; Identified by Glimmer2; putative.
    
 0.466
DET0209
Membrane protein, putative.
 
  
 0.446
DET0336
DNA-binding protein, putative.
  
    0.445
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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