STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0816sufB/sufD domain protein; Identified by match to protein family HMM PF01458. (411 aa)    
Predicted Functional Partners:
DET0815
FeS assembly ATPase SufC, putative.
 
 0.999
DET0951
nifU domain protein; Identified by similarity to SP:P05340; match to protein family HMM PF01592.
  
  
 0.962
DET0814
ABC transporter, permease protein; Identified by similarity to OMNI:NTL01CG1421.
       0.536
DET0097
Iron dependent repressor, putative; Identified by match to protein family HMM PF02742.
     
 0.535
DET0813
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01LI0916.
       0.524
DET0616
Hydrogenase maturation protease; Identified by similarity to SP:P19930; match to protein family HMM TIGR00072.
  
     0.418
DET0248
Cysteine desulfurase; Identified by similarity to SP:O54055.
 
  
 0.404
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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