STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtcBConserved hypothetical protein; Identified by similarity to OMNI:AF0862; match to protein family HMM PF01139; Belongs to the RtcB family. (486 aa)    
Predicted Functional Partners:
DET0822
Conserved hypothetical protein; Identified by similarity to SP:Q9UX79; match to protein family HMM PF01951.
 
 0.996
DET0824
Nitroreductase family protein.
  
    0.774
DET0183
ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by similarity to SP:P25888; Belongs to the DEAD box helicase family.
   
 0.649
DET0819
Thymidylate synthase, putative; Identified by similarity to SP:P80305.
     
 0.564
DET0821
Conserved domain protein; Identified by similarity to SP:P21884.
       0.537
DET0820
Hypothetical protein; Identified by Glimmer2; putative.
       0.536
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.