STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0851Sodium extrusion protein NatA, putative; Identified by similarity to GP:3688825. (298 aa)    
Predicted Functional Partners:
DET0852
Sodium extrusion protein NatB, putative; Identified by similarity to GP:3688826.
 
  
 0.967
DET0850
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MM0209.
       0.655
DET0849
biotin--acetyl-CoA-carboxylase ligase; Identified by similarity to GP:773349; match to protein family HMM PF03099; match to protein family HMM TIGR00121.
       0.474
DET0944
High-affinity branched-chain amino acid ABC transporter, permease protein, putative; Identified by similarity to SP:P22729; Belongs to the binding-protein-dependent transport system permease family.
 
      0.473
DET0854
Hypothetical protein; Identified by Glimmer2; putative.
       0.442
DET0856
ABC transporter, permease protein, putative.
 
   
 0.402
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.