STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0920Iron-sulfur cluster-binding protein. (136 aa)    
Predicted Functional Partners:
DET0921
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00401; match to protein family HMM PF01837.
 
  
  0.994
DET0919
Conserved hypothetical protein; Identified by similarity to OMNI:MJ1526.
 
     0.948
DET0147
[Fe] hydrogenase, large subunit HymC, putative; Identified by similarity to GP:14250935; match to protein family HMM PF02256.
   
 
 0.915
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
    
  0.900
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
     
  0.900
metM
Homoserine dehydrogenase; Identified by similarity to SP:P08499; match to protein family HMM PF00742.
     
  0.900
DET0666
Carbon monoxide dehydrogenase, alpha subunit; Identified by similarity to SP:P27988; match to protein family HMM TIGR00316.
    
   0.833
DET0700
Carbon monoxide dehydrogenase, alpha subunit; Identified by similarity to SP:P27988; match to protein family HMM TIGR00316.
    
   0.833
cysK
Cysteine synthase A; Identified by match to protein family HMM TIGR01136; match to protein family HMM TIGR01139; Belongs to the cysteine synthase/cystathionine beta- synthase family.
     
  0.800
DET0864
Hydrogenase subunit HymB, putative; Identified by similarity to GP:14250934.
     
 0.625
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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