STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0946AMP-binding protein. (630 aa)    
Predicted Functional Partners:
DET1033
long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P29212.
 
 0.962
DET0938
High-affinity branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22730.
    0.906
DET0944
High-affinity branched-chain amino acid ABC transporter, permease protein, putative; Identified by similarity to SP:P22729; Belongs to the binding-protein-dependent transport system permease family.
 
    0.889
DET0941
High-affinity branched chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P21630.
    0.881
DET0945
High-affinity branched-chain amino acid ABC transporter, permease protein, putative; Identified by similarity to SP:P08340; Belongs to the binding-protein-dependent transport system permease family.
 
    0.880
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.853
DET0940
AMP-binding enzyme.
 
    0.795
DET0943
Lipoprotein, putative.
 
    0.783
DET0942
Lipoprotein, putative.
 
    0.663
rplE
Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs.
    
 
 0.593
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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