STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iorAIndolepyruvate ferredoxin oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates. (598 aa)    
Predicted Functional Partners:
iorB
Indolepyruvate ferredoxin oxidoreductase, beta subunit; Identified by similarity to SP:O07836.
 
 
 0.970
DET0864
Hydrogenase subunit HymB, putative; Identified by similarity to GP:14250934.
     
 0.617
DET0147
[Fe] hydrogenase, large subunit HymC, putative; Identified by similarity to GP:14250935; match to protein family HMM PF02256.
     
 0.577
DET0729
[Fe] hydrogenase, HymB subunit, putative; Identified by similarity to GP:14250934.
     
 0.562
DET1014
ACT domain protein.
 
    0.520
gltA
Glutamate synthase (NADPH), homotetrameric; Identified by match to protein family HMM TIGR01316.
      0.440
porG
Pyruvic-ferredoxin oxidoreductase, gamma subunit; Identified by similarity to SP:Q51799.
  
 
 0.426
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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