STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0951nifU domain protein; Identified by similarity to SP:P05340; match to protein family HMM PF01592. (127 aa)    
Predicted Functional Partners:
DET0248
Cysteine desulfurase; Identified by similarity to SP:O54055.
 
 0.999
DET0815
FeS assembly ATPase SufC, putative.
  
  
 0.967
DET0816
sufB/sufD domain protein; Identified by match to protein family HMM PF01458.
  
  
 0.962
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.954
DET0950
Conserved domain protein; Identified by similarity to OMNI:NTL01SS00193.
       0.773
DET0949
CBS domain protein.
       0.746
DET0953
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00403; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.736
DET1632
Identified by match to protein family HMM PF01106.
  
 
 0.712
DET0729
[Fe] hydrogenase, HymB subunit, putative; Identified by similarity to GP:14250934.
     
 0.514
DET0952
Conserved hypothetical protein; Identified by similarity to OMNI:TM0315.
       0.507
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.