STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0953Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00403; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525. (828 aa)    
Predicted Functional Partners:
DET0952
Conserved hypothetical protein; Identified by similarity to OMNI:TM0315.
 
     0.878
DET0954
Hsp20/alpha crystallin family protein; Belongs to the small heat shock protein (HSP20) family.
  
  
 0.762
DET0951
nifU domain protein; Identified by similarity to SP:P05340; match to protein family HMM PF01592.
  
  
 0.736
DET0032
Identified by match to protein family HMM TIGR01297; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
  
  
 0.729
DET0331
Cation efflux family protein; Identified by similarity to GP:18378082; match to protein family HMM TIGR01297; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
 
 0.723
ccdA
Cytochrome c-type biogenesis protein CcdA; Identified by similarity to SP:P45706.
 
   
 0.719
DET0198
Glutaredoxin family protein; Identified by similarity to SP:P23171.
   
 
 0.692
DET0097
Iron dependent repressor, putative; Identified by match to protein family HMM PF02742.
     
 0.688
sod
Superoxide dismutase; Identified by similarity to SP:Q03300; match to protein family HMM PF02777.
 
   
 0.687
DET1005
Transcriptional regulator, ArsR family.
  
  
 0.678
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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