STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET0978Glycosyl transferase, group 1 family protein; Identified by similarity to OMNI:NTL01ML0454. (382 aa)    
Predicted Functional Partners:
DET0977
CDP-alcohol phosphatidyltransferase family protein; Identified by similarity to GP:10442119; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
   
 0.875
DET0979
Identified by match to protein family HMM PF01658.
 
   
 0.721
DET0202
Histidinol-phosphate phosphatase family protein/glycosyl transferase, group 2 family protein; Identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662.
  
  
 0.527
DET0525
Conserved hypothetical protein; Identified by similarity to OMNI:AF0525.
  
     0.483
DET1141
Glycosyl transferase/polysaccharide deacetylase family protein; Identified by match to protein family HMM PF01522.
     
 0.471
DET1631
TPR domain protein; Identified by match to protein family HMM PF00515.
  
 
 
 0.460
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
       0.434
DET0980
Hypothetical protein; Identified by Glimmer2; putative.
       0.406
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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