STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1002Glycosyl transferase, group 1 family protein; Identified by similarity to OMNI:NTL01CG0396. (405 aa)    
Predicted Functional Partners:
gmhA
Phosphoheptose isomerase; Identified by similarity to SP:Q9AGY7.
  
 0.917
DET1001
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01PA1525.
 
  
 0.882
DET1003
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.818
DET0202
Histidinol-phosphate phosphatase family protein/glycosyl transferase, group 2 family protein; Identified by match to protein family HMM TIGR01656; match to protein family HMM TIGR01662.
 
  
 0.671
DET1006
Permease, putative.
  
    0.575
DET1141
Glycosyl transferase/polysaccharide deacetylase family protein; Identified by match to protein family HMM PF01522.
    
 0.557
DET1005
Transcriptional regulator, ArsR family.
       0.534
DET1007
Identified by match to protein family HMM TIGR00412.
  
  
 0.517
groEL
Co-chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
     
 0.511
DET0209
Membrane protein, putative.
 
  
 0.500
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.