STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1005Transcriptional regulator, ArsR family. (112 aa)    
Predicted Functional Partners:
DET1006
Permease, putative.
     
 0.797
DET1007
Identified by match to protein family HMM TIGR00412.
     
 0.751
DET0953
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00403; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.678
arsC
Arsenate reductase; Identified by similarity to SP:P30330; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
  
 0.556
DET1002
Glycosyl transferase, group 1 family protein; Identified by similarity to OMNI:NTL01CG0396.
       0.534
DET1003
Hypothetical protein; Identified by Glimmer2; putative.
       0.534
DET1001
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01PA1525.
       0.524
DET0908
Arsenical pump membrane protein, putative; Identified by similarity to SP:P37310.
  
  
 0.511
DET0097
Iron dependent repressor, putative; Identified by match to protein family HMM PF02742.
 
   
 0.500
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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