STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaKphenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (439 aa)    
Predicted Functional Partners:
DET0937
Thioesterase family protein; Identified by similarity to SP:P76084; match to protein family HMM TIGR00369.
 
 
 0.942
DET0940
AMP-binding enzyme.
  
  
 
0.920
DET1014
ACT domain protein.
 
   0.911
DET0941
High-affinity branched chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P21630.
 
    0.529
DET1016
Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM TIGR00229; match to protein family HMM TIGR01612.
       0.442
DET1013
Hypothetical protein; Identified by Glimmer2; putative.
       0.418
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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