STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1049HD domain protein. (311 aa)    
Predicted Functional Partners:
DET0127
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 0.744
DET1016
Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM TIGR00229; match to protein family HMM TIGR01612.
 
 0.699
DET1381
GGDEF domain/HD domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254; match to protein family HMM TIGR00277.
 
 
 
0.631
DET0625
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 
 0.559
DET1050
Hypothetical protein; Identified by Glimmer2; putative.
       0.556
hpt-1
Hypoxanthine phosphoribosyltransferase; Identified by similarity to SP:P37472; match to protein family HMM TIGR01203; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
   
 
 0.550
DET0171
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 
 0.540
DET1141
Glycosyl transferase/polysaccharide deacetylase family protein; Identified by match to protein family HMM PF01522.
  
  
 0.516
DET0624
Response regulator; Identified by similarity to OMNI:TM0186; match to protein family HMM TIGR00277.
 
 
0.470
DET0305
Sensory box sensor histidine kinase; Identified by similarity to OMNI:NTL01MM3099; match to protein family HMM TIGR00229.
 
 0.435
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.