STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1063DNA-binding response regulator, LuxR family. (232 aa)    
Predicted Functional Partners:
DET1064
Sensory box sensor histidine kinase; Identified by similarity to OMNI:NTL02MA1586; match to protein family HMM TIGR00229.
 
   0.963
DET0431
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 0.861
DET1560
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
 
 
 0.859
DET0662
Sensor histidine kinase.
 
   0.849
DET1530
Sensor histidine kinase.
  
   0.837
DET1065
RNA methyltransferase, TrmA family; Identified by match to protein family HMM PF05958; match to protein family HMM TIGR00479; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.531
DET1016
Sensory box sensor histidine kinase/response regulator; Identified by match to protein family HMM TIGR00229; match to protein family HMM TIGR01612.
   
 
 0.466
DET0127
Sensory box sensor histidine kinase; Identified by match to protein family HMM TIGR00229.
  
 
 0.430
DET1062
Hypothetical protein; Identified by Glimmer2; putative.
       0.420
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.