Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DET1071Holin; Identified by match to protein family HMM PF05105; match to protein family HMM TIGR01593. (141 aa)    
Predicted Functional Partners:
DET1070
Endolysin, putative; Identified by match to protein family HMM PF01183.
 
     0.884
DET1085
Major capsid protein, HK97 family; Identified by match to protein family HMM TIGR01554.
 
    0.681
DET1069
Site-specific recombinase, phage integrase family.
 
     0.642
DET1076
Hypothetical protein; Identified by Glimmer2; putative.
       0.610
DET1074
Hypothetical protein; Identified by Glimmer2; putative.
       0.606
DET1078
Tail tape measure protein, TP901 family; Identified by match to protein family HMM PF05017; match to protein family HMM TIGR01760.
  
    0.603
DET1075
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.589
DET1068
Site-specific recombinase, phage integrase family, truncation.
 
     0.586
DET1067
Site-specific recombinase, phage integrase family.
 
     0.585
DET1072
Hypothetical protein; Identified by Glimmer2; putative.
       0.580
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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