STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1078Tail tape measure protein, TP901 family; Identified by match to protein family HMM PF05017; match to protein family HMM TIGR01760. (907 aa)    
Predicted Functional Partners:
DET1084
DNA packaging protein, putative.
 
   0.946
DET1070
Endolysin, putative; Identified by match to protein family HMM PF01183.
 
     0.900
DET1079
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01LI2553.
 
     0.885
DET1080
Major tail protein, phi13 family; Identified by match to protein family HMM TIGR01603.
 
     0.884
DET1081
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01LL1060.
 
     0.884
DET1082
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01LL1059.
 
     0.884
DET1077
Hypothetical protein; Identified by Glimmer2; putative.
       0.789
DET1074
Hypothetical protein; Identified by Glimmer2; putative.
       0.745
DET1076
Hypothetical protein; Identified by Glimmer2; putative.
       0.745
DET1075
Hypothetical protein; Identified by Glimmer2; putative.
       0.743
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.