Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DET1087Portal protein, HK97 family, putative; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537. (444 aa)    
Predicted Functional Partners:
DET1086
ATP-dependent Clp protease, proteolytic subunit ClpP, putative; Belongs to the peptidase S14 family.
  
 0.990
DET1085
Major capsid protein, HK97 family; Identified by match to protein family HMM TIGR01554.
 
 
 
 0.972
DET1084
DNA packaging protein, putative.
 
 
 0.930
DET1088
Terminase, large subunit, putative.
 
   
 0.918
DET1083
Head-tail adaptor, putative; Identified by match to protein family HMM TIGR01563.
  
 
 0.759
DET1093
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.602
DET1080
Major tail protein, phi13 family; Identified by match to protein family HMM TIGR01603.
       0.583
DET1081
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01LL1060.
       0.583
DET1082
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01LL1059.
       0.583
DET1079
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01LI2553.
       0.577
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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