STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DET1101Conserved hypothetical protein; Identified by similarity to GP:18920552. (190 aa)    
Predicted Functional Partners:
DET1102
Conserved hypothetical protein; Identified by similarity to OMNI:EF0319.
 
     0.951
DET1103
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.939
DET1100
DNA-dependent DNA polymerase, family A.
 
     0.866
DET1097
Conserved hypothetical protein; Identified by similarity to OMNI:EF0329.
 
     0.798
DET0071
SNF2 family helicase, putative.
 
     0.783
DET1096
SNF2 domain protein.
 
     0.783
DET0074
DNA-dependent DNA polymerase, family A; Identified by similarity to SP:P06225.
 
     0.782
DET1098
Virulence-associated protein E, putative; Identified by similarity to GP:563258; match to protein family HMM PF05272.
 
     0.730
DET0072
Phage/plasmid DNA primase, putative; Identified by match to protein family HMM TIGR01613.
 
     0.578
DET1104
Hypothetical protein; Identified by Glimmer2; putative.
       0.407
Your Current Organism:
Dehalococcoides mccartyi
NCBI taxonomy Id: 243164
Other names: D. mccartyi 195, Dehalococcoides ethenogenes 195, Dehalococcoides mccartyi 195, Dehalococcoides mccartyi str. 195, Dehalococcoides mccartyi strain 195
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.